Curr. Vita

Matthew B. Jones

jones@nceas.ucsb.edu

National Center for Ecological Analysis and Synthesis E-mail: jones@nceas.ucsb.edu

University of California Santa Barbara 735 State St., Suite 300 Santa Barbara, CA 93101

Education

• 1994 UNIVERSITY OF FLORIDA, M.S. Zoology
• 1989 DARTMOUTH COLLEGE, B.A. Biology

Appointments

• 2007 – present Director of Informatics Research and Development
  • National Center for Ecological Analysis and Synthesis, U. of California Santa Barbara
• 2000 - 2006 Informatics Researcher
  • National Center for Ecological Analysis and Synthesis, U. of California Santa Barbara
• 1996 - 2000 Database and Information Specialist
  • National Center for Ecological Analysis and Synthesis, U. of California Santa Barbara
• 1994 - 1996 Programmer Psychology, U. of California Santa Barbara

Grants

• EVOSTC.
• EcoTrust
• DataONE: Data Observation Network for Earth. (Michener, Hampton, Cook, Frame, Smith, Jones, et al.) 2009. NSF.
• Semantic Tools for Ecological Data Management. (Jones, Schildhauer, Madin, O’Brien, Bowers) 2008. NSF.
• Creation of an International Virtual Data Center (VDC) for the Biodiversity, Ecological and Environmental Sciences. 2008. (Michener, Jones, et al.) NSF.
• SDCI NMI Improvement: Development of Kepler CORE - A Comprehensive, Open, Robust, and Extensive Scientific Workflow Infrastructure (Ludaescher, Altintas, Bowers, Jones, McPhillips, Schildhauer). 2007. NSF 0722079.
• A Workshop for Advancing a Unified Model for Observational Data in the Ecological and Environmental Sciences (Schildhauer, Jones, Madin). 2007. NSF DBI-07334849. ($50,000)
• RCN: TraitNet - Coordinating Trait-Based Ecological and Revolutionary Research. 2007. Naeem, Bunker, et al. NSF 0639161.
• Faculty Institutes for Reforming Science Teaching - FIRST III. 2007. Jones, Schildhauer. Subcontracted from Ebert-May et al. Michigan State University. ($132,651)
• Data Management and Analysis Tools Supporting Adaptive Management in South African Parks (Schildhauer, Jones, Reichman). 2006. Andrew W. Mellon Foundation. ($649,431)
• Management and Analysis of Environmental Observatory Data using the Kepler Scientific Workflow System. 2006. Jones, Altintas, Baru, Gallagher, and Schildhauer. NSF 0619060, $2.7M.
• Enabling the Science Environment for Ecological Knowledge (SEEK). 2002. Reichman, Jones, Schildhauer, et al. (collaborative award with UNM, UCSD, and KU). NSF 0225676 ($2,910,756 for UCSB of $12.05M total).
• Webs on the Web: Internet Database, Analysis, and Visualization of Ecological Networks. Martinez, Dunne, Jones, Williams, and Yoon. 2002. NSF 0234980 ($1,443,829).
• Production implementation of the Knowledge Network for Biocomplexity. 2003. Reichman, Jones, Schildhauer. Andrew W. Mellon Foundaiton. ($700,000)
• Resource Discovery Initiative for Field Stations (RDIFS). 2001. Michener, Jones, McCartney et al. NSF Research Collaboration Network program. NSF 0129792.
• Capturing Data in the Field: An Application Framework for Easily Creating Custom Data and Metadata Entry Forms on Handheld and Desktop Computers. 2001. Gaines, Blanchette, C. Jones, M. Jones, and Schildhauer. NSF DBI-0131178 ($887,634).
• A Knowledge Network for Biocomplexity: Building and Evaluating a Metadata-based Framework for Integrating Heterogeneous Scientific Data. Reichman, Jones, Brunt, Willig, and Helly. NSF DEB 9980154 ($2,979,276).
• Integrating Marine Ecology Data for Scientific Analysis and Resource Management. 1999. Reichman, Jones, and Schilhauer. NSF 9904777 ($882,627).

Service

• Chair, Data Services Working Group, National Ecological Observatory Network
• Chair, Kepler Leadership Team (2009-2010)
• Editorial Board, Ecological Informatics 2006-present
• Science Advisory Board, Tropical Ecology, Assessment & Monitoring Network, Conservation International (2006-present)
• Chair, Global Biological Information Facility (GBIF) Metadata Implementation Framework Task Group (2009)
• Scientific Program Committees
  • International Workshop on Linked Science 2011
  • International Society for Ecological Informatics 2006, 2008
  • Data Integration in the Life Sciences 2005
  • e-Science 2007
  • Environmental Information Management 2008, 2011 (Chair)
  • Semantic Scientific Knowledge Integration 2008
  • Intelligent Systems for Environmental (Knowledge) Engineering and EcoInformatics 2009
  • SIGMOD, Workflow Approaches for New Data-centric Science (WANDS10) 2010
  • Scientific and Statistical Database Management Conference (SSDBM) 2011
  • Computing for Citizen Science IEEE eScience Conference December 6-8, 2011
  • 1st International Workshop on Linked Science (LISC2011) October 24, 2011
  • Scalable Workflow Enactment Engines and Technologies (SWEET12) May 20-25, 2012
• NEON Information Technology and Communications Committee
• Biological Data Working Group Member, Federal Geographic Data Committee
• Author, Biological Data Profile FGDC metadata standard
• Global Biological Information Facility (GBIF) Task Group on Observational Data
• Convener, Observations Task Group, Biodiversity Information Standards (TDWG)

Software

• Ecological Metadata Language, http://knb.ecoinformatics.org/software/eml/ (released versions 1.0, 1.1, 1.2, 1.3, 1.4, 1.4.1, 2.0.0, 2.0.1, 2.1.0, 2.1.1)
• Morpho: Data Management Software for Ecologists, http://knb.ecoinformatics.org/software/morpho/, versions 1.0, 1.1, 1.2, 1.2.1, 1.3, 1.4, 1.5, 1.5.1, 1.6, 1.6.1, 1.7.0, 1.8.0, 1.9.0, 1.9.1, 1.10.0, 1.10.1, 1.10.2, 1.10.3, 1.11.0, 1.11.1)
• Metacat: Metadata Catalog Server, http://knb.ecoinformatics.org/software/metacat/, versions 1.0, 1.1, 1.2, 1.3, 1.4, 1.4.1, 1.5, 1.6, 1.7, 1.8, 1.8.1, 1.9.1, 1.9.2, 1.9.3, 1.9.4, 1.9.5, 2.0.0, 2.0.1, 2.0.2, 2.0.3, 2.0.4, 2.0.5, 2.0.6, 2.0.7, 2.0.8, 2.1.0, 2.1.1, 2.2.0, 2.2.1, 2.3.0, 2.3.1, 2.4.0, 2.4.1, 2.4.2, 2.4.3, 2.5.1, 2.6.0, 2.7.0, 2.7.1, 2.7.2)
• Kepler: Scientific Workflow System, http://kepler-project.org/, versions 1.0.0alpha1-9, 1.0.0beta1, 1.0.0beta2, 1.0.0beta3, 1.0.0, 2.0.0, 2.1.0, 2.2.0, 2.3.0, 2.4.0, 2.5.0)
• Jones M, Slaughter P, Nahf R, Jones C, Boettiger C, Walker L, Hallett L, Chamberlain S, Hart E and Read J (2016). dataone: R Interface to the DataONE REST API. doi: 10.5063/F1M61H5X, R package version 2.0.1, http://github.com/DataONEorg/rdataone
• Jones M, Slaughter P, Ooms J, Boettiger C and Chamberlain S (2016). redland: RDF Library Bindings in R. doi: 10.5063/F1VM496B (URL: http://doi.org/10.5063/F1VM496B), R package version 1.0.17-8, <URL: https://github.com/ropensci/redland-bindings/tree/master/R/redland>.
• Hallett L, Jones S, MacDonald A, Flynn D, Slaughter P, Ripplinger J, Collins S, Gries C and Jones M (2016). codyn: Community Dynamics Metrics. doi: 10.5063/F1542KJB (URL: http://doi.org/10.5063/F1542KJB), R package version 1.1.0, <URL: https://github.com/laurenmh/codyn>.

Publications

1. Brinckman, A., Chard, K., Gaffney, N., Hategan, M., Jones, M. B., Kowalik, K., … Turner, K. (2018). Computing environments for reproducibility: Capturing the “Whole Tale.” Future Generation Computer Systems. https://doi.org/10.1016/j.future.2017.12.029 [pdf] [link]
2. Cheatham, M., Krisnadhi, A., Amini, R., Hitzler, P., Janowicz, K., Shepherd, A., … Ji, P. (2018). The GeoLink knowledge graph. Big Earth Data, 1–13. https://doi.org/10.1080/20964471.2018.1469291 [pdf] [link]
3. Collins, S. L., Avolio, M. L., Gries, C., Hallett, L. M., Koerner, S. E., La Pierre, K. J., … Jones, M. B. (2018). Temporal heterogeneity increases with spatial heterogeneity in ecological communities. Ecology, 99(4), 858–865. https://doi.org/10.1002/ecy.2154 [pdf] [link]
4. Hampton, S. E., Jones, M. B., Wasser, L. A., Schildhauer, M. P., Supp, S. R., Brun, J., … Aukema, J. E. (2017). Skills and Knowledge for Data-Intensive Environmental Research. BioScience, 67(6), 546–557. https://doi.org/10.1093/biosci/bix025 [pdf] [link]
5. Ludaescher, B., Chard, K., Gaffney, N., Jones, M. B., Nabrzyski, J., Stodden, V., & Turk, M. (2016, October 28). Capturing the "Whole Tale" of Computational Research: Reproducibility in Computing Environments. Retrieved from http://arxiv.org/abs/1610.09958 [link]
6. Cao, Y., Jones, C., Cuevas-Vicenttín, V., Jones, M. B., Ludäscher, B., McPhillips, T., … Wei, Y. (2016). DataONE: A Data Federation with Provenance Support. In M. Mattoso & B. Glavic (Eds.), Provenance and Annotation of Data and Processes (Vol. 9672, pp. 230–234). Cham: Springer International Publishing. Retrieved from http://link.springer.com/10.1007/978-3-319-40593-3_28 [link]
7. Hallett, L. M., Jones, S. K., MacDonald, A. A. M., Jones, M. B., Flynn, D. F. B., Ripplinger, J., … Collins, S. L. (2016). codyn: An r package of community dynamics metrics. Methods in Ecology and Evolution, 7(10), 1146–1151. https://doi.org/10.1111/2041-210X.12569 [pdf] [link]
8. Shepherd, A., Chandler, C., Arko, R. A., Jones, M., Hitzler, P., Janowicz, K., … Rauch, S. (2015). Linked Data: Forming Partnerships at the Data Layer. In 2015 American Geophysical Union Fall Meeting, San Francisco, 14-18 December 2015. Retrieved from http://adsabs.harvard.edu/abs/2015AGUFMIN12A..03S [link]
9. Jones, M. (2015). Lowering the Barrier to Reproducible Research by Publishing Provenance from Common Analytical Tools. In 2015 AGU Fall Meeting. AGU. Retrieved from http://adsabs.harvard.edu/abs/2015AGUFMIN43D..07J [link]
10. Jones, M. (2015). Realizing the Living Paper using the ProvONE Model for Reproducible Research. In 2015 AGU Fall Meeting. AGU. Retrieved from http://adsabs.harvard.edu/abs/2015AGUFMIN53B1833J [link]
11. Krisnadhi, A., Hu, Y., Janowicz, K., Hitzler, P., Arko, R., Carbotte, S., … Wiebe, P. (2015). The GeoLink Framework for Pattern-based Linked Data Integration. Proceedings of the ISWC 2015 Posters & Demonstrations Track. Retrieved from http://ceur-ws.org/Vol-1486/paper_99.pdf [pdf] [link]
12. Krisnadhi, A., Hu, Y., Janowicz, K., Hitzler, P., Arko, R., Carbotte, S., … Wiebe, P. (2015). The GeoLink Modular Oceanography Ontology. In The Semantic Web - ISWC 2015. 14th International Semantic Web Conference, Bethlehem, Pennsylvania, United States, October 11-15, 2015. Springer. https://doi.org/10.1007/978-3-319-25010-6_19 [link]
13. Katz, D. S., Choi, S.-C. T., Wilkins-Diehr, N., Hong, N. C., Venters, C. C., Howison, J., … Littauer, R. (2015). Report on the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2). CoRR, abs/1507.01715. https://doi.org/10.5334/jors.85 [link]
14. Shepherd, A., Arko, R., Krisnadhi, A., Hitzler, P., Janowicz, K., Chandler, C., … Fils, D. (2015). Ontology Design Patterns: Bridging the Gap Between Local Semantic Use Cases and Large-Scale, Long-Term Data Integration. In European Geosciences Union General Assembly 2015, Vienna, Austria, 12 - 17 April 2015. Retrieved from http://adsabs.harvard.edu/abs/2015EGUGA..17.8413S [link]
15. Arko, R. A., Carbotte, S., Chandler, C., Cheatham, M., Fils, D., Hitzler, P., … Wiebe, P. (2015). EarthCube GeoLink: Semantics and Linked Data for the Geosciences. In 2015 American Geophysical Union Fall Meeting, San Francisco, 14-18 December 2015. Retrieved from http://adsabs.harvard.edu/abs/2015AGUFMIN41C1710A [link]
16. Stephanie E Hampton, Sean Anderson, Sarah C Bagby, Corinna Gries, Xueying Han, Edmund Hart, … Naupaka Zimmerman. (2014). The Tao of Open Science for Ecology. https://doi.org/10.7287/peerj.preprints.549v1 [link]
17. Michener, W. K., & Jones, M. B. (2012). Ecoinformatics: supporting ecology as a data-intensive science. Trends in Ecology & Evolution, 27(2), 85–93. https://doi.org/10.1016/j.tree.2011.11.016 [link]
18. Dexter, N. C., Cobb, J. W., Vieglais, D., Jones, M. B., & Lowe, M. (2011). DataONE member node pilot integration with TeraGrid? In Proceedings of the 2011 TeraGrid Conference on Extreme Digital Discovery - TG ’11 (p. 1). New York, New York, USA: ACM Press. https://doi.org/10.1145/2016741.2016756 [link]
19. Reichman, O. J., Jones, M. B., & Schildhauer, M. P. (2011). Challenges and opportunities of open data in ecology. Science (New York, N.Y.), 331(6018), 703–5. https://doi.org/10.1126/science.1197962 [link]
20. Leinfelder, B., Bowers, S., O’Brien, M., Jones, M. B., & Schildhauer., M. (2011). Using Semantic Metadata for Discovery and Integration of Heterogeneous Ecological Data. In M. B. Jones & C. Gries (Eds.), Proceedings of the Environmental Information Management Conference (EIM 2011) (pp. 92–97). Santa Barbara, CA: University of California. https://doi.org/10.5060/D2NC5Z4X
21. Jones, M. B., & Gries, C. (Eds.). (2011). Proceedings of the Environmental Information Management Conference (EIM 2011). In Proceedings of the Environmental Information Management Conference (EIM 2011) (pp. 1–175). Santa Barbara: University of California. https://doi.org/10.5060/D2NC5Z4X [link]
22. Barseghian, D., Crawl, D., Jones, M. B., Altintas, I., Tao, J., & Riddle, S. (2011). Sensor lifecycle management using scientific workflows. In M. B. Jones & C. Gries (Eds.), Proceedings of the Environmental Information Management Conference (EIM 2011) (pp. 33–38). University of California. https://doi.org/10.5060/D2NC5Z4X [pdf]
23. Leinfelder, B., Tao, J., Costa, D., Jones, M. B., Servilla, M., O’Brien, M., & Burt, C. (2010). A metadata-driven approach to loading and querying heterogeneous scientific data. Ecological Informatics, 5(1), 3–8. https://doi.org/10.1016/j.ecoinf.2009.08.006 [pdf] [link]
24. Gallagher, J., Potter, N., & Jones, M. B. (2010). Common Patterns with End-to-end Interoperability for Data Access. AGU Fall Meeting Abstracts. Retrieved from http://adsabs.harvard.edu/abs/2010AGUFMIN11B1080G [link]
25. Schildhauer, M., Bermudez, L. E., Bowers, S., Dibner, P. C., Gries, C., Jones, M. B., … Madin, J. (2010). A core observational data model for enhancing the interoperability of ontologically annotated environmental data. AGU Fall Meeting Abstracts. Retrieved from http://adsabs.harvard.edu/abs/2010AGUFMIN44B..05S [link]
26. Bowers, S., Cao, H., Schildhauer, M., Jones, M., Leinfelder, B., & O’Brien, M. (2010). A semantic annotation framework for retrieving and analyzing observational datasets. In Proceedings of the third workshop on Exploiting semantic annotations in information retrieval - ESAIR ’10 (p. 31). New York, New York, USA: ACM Press. https://doi.org/10.1145/1871962.1871982 [pdf] [link]
27. Gries, E. C., Rodrigo, A., Jones, M. B., & Vieglais, D. (2010). Cyberinfrastructure and the NSF Dimensions of Biodiversity Program Solicitation Planning for Success. [pdf]
28. Barseghian, D., Altintas, I., Jones, M. B., Crawl, D., Potter, N., Gallagher, J., … Seabloom, E. W. (2010). Workflows and extensions to the Kepler scientific workflow system to support environmental sensor data access and analysis. Ecological Informatics, 5(1), 42–50. https://doi.org/10.1016/j.ecoinf.2009.08.008 [link]
29. Jones, M. B., & Gries, C. (2010). Advances in environmental information management. Ecological Informatics, 5(1), 1–2. https://doi.org/10.1016/j.ecoinf.2010.01.001 [link]
30. Berkley, C., Bowers, S., Jones, M. B., Madin, J. S., & Schildhauer, M. (2009). Improving Data Discovery in Metadata Repositories through Semantic Search. In Proceedings of iSEEK’09. IEEE Computer Society. [pdf]
31. Ludaescher, B., Altintas, I., Bowers, S., Cummings, J., Critchlow, T., Deelman, E., … Vouk, M. (2009). Scientific Process Automation and Workflow Management. In A. Shoshani & D. Rotem (Eds.), Scientific Data Management: Challenges, Technology, and Deployment. Chapman & Hall/CRC.
32. Borer, E., Seabloom, E., Jones, M. B., & Schildhauer, M. (2009). Some Simple Guidelines for Effective Data Management. Bulletin of the Ecological Society of America, 205–214. https://doi.org/10.1890/0012-9623-90.2.205 [pdf] [link]
33. Wang, J., Altintas, I., Hosseini, P. R., Barseghian, D., Crawl, D., Berkley, C., & Jones, M. B. (2009). Accelerating Parameter Sweep Workflows by Utilizing Ad-hoc Network Computing Resources: An Ecological Example. 2009 Congress on Services - I, 267–274. https://doi.org/10.1109/SERVICES-I.2009.9 [link]
34. Urban-Lurain, M., Ebert-May, D., Momsen, J., McFall, R., Jones, M. B., Leinfelder, B., & Sticklen, J. (2009). An Assessment Database for Supporting Educational Research. In 2009 39th IEEE Frontiers in Education Conference (pp. M2J–1–6). San Antonio, TX: IEEE Computer Society. https://doi.org/10.1109/FIE.2009.5350595 [link]
35. Kruger, J., Jones, M., Schildhauer, M., & Stevens, N. (2008). New technologies for automating the management and analysis of conservation data. Ecological Circuits, 1, 5–8. [pdf]
36. Wang, J., Altintas, I., Berkley, C., Gilbert, L., & Jones, M. B. (2008). A High-Level Distributed Execution Framework for Scientific Workflows. 2008 IEEE Fourth International Conference on EScience, 634–639. https://doi.org/10.1109/eScience.2008.166 [link]
37. Barseghian, D., Altintas, I., & Jones, M. B. (2008). Accessing and using sensor data within the Kepler scientific workflow system. In C. Gries & M. B. Jones (Eds.), Proceedings of Environmental Information Management Conference 2008 (pp. 26–32). Albuquerque, NM. https://doi.org/10.5060/D2S46PV7
38. Leinfelder, B., Tao, J., Costa, D., Jones, M. B., Servilla, M., O’Brien, M., & Burt, C. (2008). Using metadata for loading and querying heterogeneous scientific data. In C. Gries & M. B. Jones (Eds.), Proceedings of Environmental Information Management Conference 2008 (pp. 90–95). Albuquerque, NM. https://doi.org/10.5060/D2S46PV7 [link]
39. Gries, C., & Jones, M. B. (Eds.). (2008). Proceedings of Environmental Information Management Conference 2008. In Proceedings of Environmental Information Management Conference 2008 (p. 192). Albuquerque, NM. https://doi.org/10.5060/D2S46PV7 [link]
40. Madin, J. S., Bowers, S., Schildhauer, M. P., & Jones, M. B. (2008). Advancing ecological research with ontologies. Trends in Ecology & Evolution, 23(3), 159–68. https://doi.org/10.1016/j.tree.2007.11.007 [link]
41. Michener, W. K., Beach, J. H., Jones, M. B., Ludäscher, B., Pennington, D. D., Pereira, R. S., … Schildhauer, M. (2007). A knowledge environment for the biodiversity and ecological sciences. Journal of Intelligent Information Systems, 29(1), 111–126. https://doi.org/10.1007/s10844-006-0034-8 [pdf] [link]
42. Jones, C., Blanchette, C., Brooke, M., Harris, J., Jones, M., & Schildhauer, M. (2007). A metadata-driven framework for generating field data entry interfaces in ecology. Ecological Informatics, 2(3), 270–278. https://doi.org/10.1016/j.ecoinf.2007.06.005 [link]
43. Jones, M. B. (2007). Meta-information systems and ontologies A special feature from ISEI’06. Ecological Informatics, 2(3), 193–194. https://doi.org/10.1016/j.ecoinf.2007.09.003
44. Pennington, D., Higgins, D., Peterson, A. T., Jones, M. B., Ludaescher, B., & Bowers, S. (2007). Ecological Niche Modeling Using the Kepler Workflow System. In I. J. Taylor, E. Deelman, D. B. Gannon, & M. Shields (Eds.), Workflows for e-Science: Scientific Workflows for Grids (pp. 91–108). Springer. Retrieved from http://www.springer.com/computer/communication+networks/book/978-1-84628-519-6 [link]
45. Jones, M. B., Schildhauer, M. P., Reichman, O. J., & Bowers, S. (2006). The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere. Annual Review of Ecology, Evolution, and Systematics, 37(1), 519–544. https://doi.org/10.1146/annurev.ecolsys.37.091305.110031 [link]
46. Ludäscher, B., Altintas, I., Berkley, C., Higgins, D., Jaeger, E., Jones, M., … Zhao, Y. (2006). Scientific workflow management and the Kepler system. Concurrency and Computation: Practice and Experience, 18(10), 1039–1065. https://doi.org/10.1002/cpe.994 [link]
47. Berkley, C., Bowers, S., Jones, M. B., Ludaescher, B., Schildhauer, M., & Tao, J. (2005). Incorporating Semantics in Scientific Workflow Authoring. In J. Frew (Ed.), Proceedings of the 17th International Conference on Scientific and Statistical Database Management (pp. 75–78). Santa Barbara, CA. Retrieved from http://2005.ssdbm.org/SSDBM_2005_Proceedings.pdf. [link]
48. Michener, W., Beach, J., Bowers, S., Downey, L., Jones, M. B., Ludaescher, B., … Zhang, J. (2005). Data Integration and Workflow Solutions for Ecology. Lecture Notes in Computer Science, 3615, 321–324. https://doi.org/10.1007/11530084_32 [link]
49. Fegraus, E. H., Andelman, S., Jones, M. B., & Schildhauer, M. (2005). Maximizing the Value of Ecological Data with Structured Metadata: An Introduction to Ecological Metadata Language (EML) and Principles for Metadata Creation. Bulletin of the Ecological Society of America, 158–168. [pdf]
50. Cushing, J., Vanderbilt, K., Brunt, J., Gupta, A., Jones, M., & McCartney, P. (2005). NSF Long Term Ecological Research Sites – Praxis et Theoria. In J. Frew (Ed.), Proceedings of the 17th International Conference on Scientific and Statistical Database Management (pp. 303–306). Retrieved from http://2005.ssdbm.org/SSDBM_2005_Proceedings.pdf [link]
51. Romanello, S., Beach, J., Bowers, S., Jones, M., Ludäscher, B., Michener, W., … Schildhauer, M. (2005). Creating and Providing Data Management Services for the Biological and Ecological Sciences: Science Environment for Ecological Knowledge. In J. Frew (Ed.), Proceedings of the 17th International Conference on Scientific and Statistical Database Management (pp. 28–31). Retrieved from http://2005.ssdbm.org/SSDBM_2005_Proceedings.pdf [link]
52. Altintas, I., Berkley, C., Jaeger, E., Jones, M., Ludäscher, B., & Mock, S. (2004). Kepler: An Extensible System for Design and Execution of Scientific Workflows. In Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM’04). IEEE Computer Society. https://doi.org/10.1109/SSDM.2004.1311241 [link]
53. McCartney, P. H., & Jones, M. B. (2002). Using XML-encoded Metadata as a Basis for Advanced Information Systems for Ecological Research. In Proceedings of the 2002 System Cybernetics and Informatics Conference. Retrieved from http://intranet2.lternet.edu/documents/symposia-and-paper-sessions/2002-system-cybernetics-and-informatics-conference [pdf] [link]
54. Higgins, D., Berkley, C., & Jones, M. B. (2002). Managing Heterogeneous Ecological Data Using Morpho. In Proceedings of the 14th International Conference on Scientific and Statistical Database Management (SSDBM’02) (pp. 69–76). IEEE Computer Society. https://doi.org/10.1109/SSDM.2002.1029707 [link]
55. Berkley, C., Jones, M., Bojilova, J., & Higgins, D. (2001). Metacat: a Schema-IndependentXML Database System. In Proceedings of the Thirteenth International Conference on Scientific and Statistical Database Management, SSDBM 2001. (pp. 171–179). IEEE Computer Society. https://doi.org/10.1109/SSDM.2001.938549 [link]
56. Jones, M. B., Berkley, C., Bojilova, J., & Schildhauer, M. (2001). Managing scientific metadata. IEEE Internet Computing, 5(5), 59–68. https://doi.org/10.1109/4236.957896 [link]
57. Frondorf, A., Jones, M. B., & Stitt., S. (1999). Linking the FGDC geospatial metadata content standard to the biological/ecological sciences. In Proceedings of the Third IEEE Computer Society Metadata Conference. Bethesda, MD: IEEE Computer Society. Retrieved from http://computer.org/conferen/proceed/meta/1999/papers/4/afrondorf.html [link]
58. Nottrott, R., Jones, M. B., & Schildhauer, M. (1999). Using XML-structured metadata to automate quality assurance processing for ecological data. In Proceedings of the Third IEEE Computer Society Metadata Conference. Bethesda, MD: IEEE Computer Society. Retrieved from http://computer.org/conferen/proceed/meta/1999/papers/64/rnottrott.html [link]
59. Jones, M. B. (1998). Web-based Data Management. In W. K. Michener, J. H. Porter, & S. G. Stafford (Eds.), Data and Information Management in the Ecological Sciences: A Resource Guide. Albuquerque, New Mexico: LTER Network Office, University of New Mexico. Retrieved from http://www.ecoinformatics.org/pubs/guide/jones.fv2.htm [link]
60. Peart, D. R., Poage, N. J., & Jones, M. B. (1992). Winter injury to subalpine red spruce: influence of prior vigor and effects on subsequent growth. Canadian Journal of Forest Research, 22(6), 888–892. https://doi.org/10.1139/x92-118 [link]
61. Jones, M., Folt, C., & Guarda, S. (1991). Characterizing Individual, Population and Community Effects of Sublethal Levels of Aquatic Toxicants - an Experimental Case-Study Using Daphnia. Freshwater Biology, 26(1), 35–44. https://doi.org/10.1111/j.1365-2427.1991.tb00506.x [link]
62. Peart, D. R., Jones, M. B., & Palmiotto, P. A. (1991). Winter injury to red spruce at Mt. Moosilauke, New Hampshire. Canadian Journal of Forest Research, 21(9), 1380–1389. https://doi.org/10.1139/x91-195